Microbial Taxonomy Workshop
- Discoverability
- Visible
- Join Policy
- Restricted
- Created
- 01 Jul 2018
Online seminars
Seminar Overview: The seminars are intended to engage a diversity of stakeholders in discussions about key issues that affect the landscape of microbial systematics. Each one-hour seminar will feature two 15-minute presentations, followed by 15 minutes of discussion in break out groups of 4-5 participants, and 15 minutes of reporting by the break out groups. To maximize productivity, all participants are strongly encouraged to carefully read the assigned papers and develop opinions and ideas for discussions prior to each seminar. All seminars will be run on the Zoom platform at https://zoom.us/j/6466447774. For the best experience it is worth creating a free account with Zoom, and downloading the client software to your computer, or to your smartphone/tablet. Participants are encouraged to login 15 minutes before each event to allow time to solve problems with connectivity and audio systems.
- Introduction to the International Code of Nomenclature of Prokaryotes - Barny Whitman
- There is no single eukaryotic code and how we deal with sequence data - John Freudenstein (with help from Chris Lane)
- Readings: Parker 2008 and Adl et al., 2018 https://onlinelibrary.wiley.com/doi/abs/10.1111/jeu.12691
- Proposal to modify Candidatus status - Brian Hedlund
- Proposal to give Candidatus names priority - Ramon Rosselló-Móra
- Readings: Hedlund 2015 and Rosello-Mora 2018
- Proposal to allow genomic information as type material - Barny Whitman
- Proposal to develop a parallel nomenclature for uncultivated organisms - Kostas Konstantinidis
- Readings: Whitman 2015/2016 and Konstantinidis 2017 (Recommended: Oren 2018; Konstantinitis 2018
- Genome Taxonomy Database - Donovan Parks
- Readings: Parks 2018
Additional Reading:
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A genus definition for Bacteria and Archaea based on genome relatedness and taxonomic affiliation. Roman A. Barco, George M. Garrity, Jarrod J. Scott, Jan Amend, Kenneth H. Nealson, David Emerson (https://www.biorxiv.org/content/early/2018/08/16/392480)
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The growing tree of Archaea: new perspectives on their diversity, evolution and ecology. Panagiotis S. Adam, Buillaume Borrel, Celine Brocier-Armanet, Simonetta Gribaldo (https://www.nature.com/articles/ismej2017122)
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (https://hedlund.faculty.unlv.edu/publications/Bowers_2017.pdf)